STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3719PFAM: monooxygenase FAD-binding; KEGG: mea:Mex_1p0258 FAD dependent oxidoreductase. (418 aa)    
Predicted Functional Partners:
Snov_3718
KEGG: azc:AZC_0067 hypothetical protein.
 
     0.943
Snov_3716
PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: azc:AZC_0069 putative selenophosphate synthetase-related protein.
 
   
 0.881
Snov_3714
KEGG: msl:Msil_1993 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
     0.879
Snov_3715
PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_0070 putative histone acetyltransferase.
 
     0.879
Snov_3713
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: azc:AZC_0072 putative amidohydrolase.
 
  
 0.877
Snov_3712
KEGG: msl:Msil_1991 hypothetical protein.
 
   
 0.867
Snov_3717
PFAM: glycosyl transferase group 1; KEGG: azc:AZC_0068 glycosyltransferase.
 
   0.844
Snov_3720
KEGG: msl:Msil_1999 hypothetical protein.
     
 0.792
Snov_3711
KEGG: azc:AZC_0074 putative transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH.
 
    0.582
Snov_2631
PFAM: Endoribonuclease L-PSP; KEGG: azc:AZC_0202 L-PSP endoribonuclease.
    0.565
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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