STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3722PFAM: extracellular solute-binding protein family 1; KEGG: kol:Kole_0165 extracellular solute-binding protein family 1. (425 aa)    
Predicted Functional Partners:
Snov_3723
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kol:Kole_0164 binding-protein-dependent transport systems inner membrane component.
 
 
 0.933
Snov_3721
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kol:Kole_0166 binding-protein-dependent transport systems inner membrane component.
 
 
 0.916
Snov_3724
KEGG: rru:Rru_A1260 ABC transporter component; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.801
Snov_3727
PFAM: photosystem I assembly BtpA; KEGG: ara:Arad_9880 TIM-barrel enzyme.
 
     0.767
Snov_0844
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsh:Dshi_0549 binding-protein-dependent transport systems inner membrane component.
 
 
 0.736
Snov_4102
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL2897 putative transmembrane component of ABC transporter.
 
 
 0.713
Snov_0843
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsh:Dshi_0548 binding-protein-dependent transport systems inner membrane component.
 
 
 0.695
Snov_0836
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_0917 putative ABC transporter, permease protein.
 
 
 0.666
Snov_4101
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlg:Rleg_2427 binding-protein-dependent transport systems inner membrane component.
 
 
 0.665
Snov_1913
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlg:Rleg_4709 binding-protein-dependent transport systems inner membrane component.
 
 
 0.660
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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