STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3729KEGG: rru:Rru_A1268 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase. (212 aa)    
Predicted Functional Partners:
Snov_3728
PFAM: Carbohydrate kinase, FGGY-like; KEGG: ara:Arad_9879 xylulokinase protein.
 
   
 0.839
Snov_3727
PFAM: photosystem I assembly BtpA; KEGG: ara:Arad_9880 TIM-barrel enzyme.
 
     0.767
Snov_3726
Transcriptional regulator, DeoR family; KEGG: ara:Arad_9892 glycerol-3-phosphate transcriptional regulator protein; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR.
 
  
 0.692
Snov_2103
PFAM: major facilitator superfamily MFS_1; KEGG: azc:AZC_2211 putative proton/sugar symporter.
  
  
 0.671
Snov_3709
PFAM: aminoglycoside phosphotransferase; KEGG: azc:AZC_1165 putative kinase.
  
    0.628
Snov_3725
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rru:Rru_A1264 short-chain dehydrogenase/reductase SDR.
 
 
 
 0.539
Snov_4268
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mno:Mnod_8560 NAD-dependent epimerase/dehydratase.
  
  
 0.450
Snov_2556
TIGRFAM: glycogen debranching enzyme GlgX; 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: msl:Msil_0211 glycogen debranching enzyme GlgX; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
     
 0.423
Snov_0193
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: jan:Jann_2956 oxidoreductase-like.
 
  
 0.414
Snov_3584
KEGG: azc:AZC_4114 alpha amylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
  
 0.408
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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