STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3730Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpy:Bphyt_4353 transcriptional regulator, LysR family. (301 aa)    
Predicted Functional Partners:
Snov_1244
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpy:Bphyt_4124 transcriptional regulator, LysR family.
  
     0.740
Snov_2777
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mrd:Mrad2831_4767 LysR family transcriptional regulator.
  
     0.736
Snov_4257
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: oan:Oant_4516 LysR family transcriptional regulator.
  
     0.674
Snov_0196
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: jan:Jann_2940 LysR family transcriptional regulator.
  
     0.667
Snov_4287
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dsh:Dshi_1431 LysR family transcriptional regulator.
  
     0.662
Snov_4152
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ppg:PputGB1_3104 LysR family transcriptional regulator.
  
     0.657
Snov_3731
PFAM: NmrA family protein; KEGG: bac:BamMC406_5875 NmrA family protein.
 
     0.656
Snov_0244
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bja:blr5260 transcriptional regulatory protein.
  
     0.655
Snov_1729
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rle:pRL90211 LysR family transcriptional regulator.
  
     0.618
Snov_2242
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pfl:PFL_2911 LysR family transcriptional regulator.
  
     0.544
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.