STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3819PFAM: MltA domain protein; 3D domain protein; KEGG: xau:Xaut_2049 MltA domain-containing protein. (416 aa)    
Predicted Functional Partners:
Snov_3820
PFAM: Smr protein/MutS2; KEGG: azc:AZC_4602 putative SMR protein.
 
     0.819
Snov_3821
Transcriptional regulator, XRE family; KEGG: azc:AZC_4603 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
     
 0.794
Snov_3818
PFAM: import inner membrane translocase subunit Tim44; KEGG: xau:Xaut_2048 import inner membrane translocase subunit Tim44.
       0.770
rpsU-2
KEGG: bja:blr0365 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.456
rpsU
KEGG: bja:blr0365 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.454
Snov_2713
KEGG: xau:Xaut_0477 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
      
 0.437
Snov_1328
PFAM: peptidase M48 Ste24p; KEGG: xau:Xaut_3498 peptidase M48 Ste24p.
  
    0.415
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.405
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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