STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadACMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (172 aa)    
Predicted Functional Partners:
Snov_0754
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: xau:Xaut_4534 transcriptional coactivator/pterin dehydratase.
 
 
    0.693
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
 0.666
Snov_3919
Methyltransferase; KEGG: azc:AZC_2391 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative.
 
    0.645
Snov_3918
RNA-binding S4 domain protein; KEGG: azc:AZC_2390 pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family.
 
   
 0.630
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
    0.602
Snov_2494
PFAM: GCN5-related N-acetyltransferase; KEGG: bbt:BBta_4479 GNAT family acetyltransferase.
 
      0.592
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
 
  
 0.587
Snov_2743
PFAM: Polyprenyl synthetase; KEGG: xau:Xaut_0205 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
  
 0.570
Snov_3960
PFAM: PhoH family protein; KEGG: xau:Xaut_1811 PhoH family protein.
  
     0.550
Snov_3965
PFAM: peptidase M22 glycoprotease; KEGG: azc:AZC_4704 glycoprotease.
 
  
 0.546
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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