STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3956KEGG: xau:Xaut_1815 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (135 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.726
Snov_1661
PFAM: SmpA/OmlA domain protein; KEGG: azc:AZC_2298 SmpA protein.
  
     0.716
Snov_2489
TIGRFAM: conserved hypothetical protein; KEGG: azc:AZC_3511 double-transmembrane region.
  
   
 0.709
Snov_2490
PFAM: protein of unknown function DUF1355; KEGG: xau:Xaut_2945 hypothetical protein.
  
     0.707
Snov_2458
KEGG: xau:Xaut_2559 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
  
     0.699
Snov_3084
PFAM: protein of unknown function DUF1013; KEGG: xau:Xaut_2354 hypothetical protein.
  
     0.687
Snov_3880
KEGG: xau:Xaut_1844 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily subfamily IIA hydrolase like protein; PFAM: Haloacid dehalogenase domain protein hydrolase.
  
     0.681
Snov_2488
PFAM: protein of unknown function DUF58; KEGG: xau:Xaut_2947 hypothetical protein.
  
     0.654
Snov_3801
KEGG: xau:Xaut_1448 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.
  
     0.644
Snov_3408
KEGG: azc:AZC_4606 hypothetical protein.
  
     0.641
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.