STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3979KEGG: rlt:Rleg2_2148 hypothetical protein. (63 aa)    
Predicted Functional Partners:
Snov_0054
PFAM: protein of unknown function DUF1328; KEGG: mno:Mnod_4397 protein of unknown function DUF1328.
 
    0.802
Snov_0652
PFAM: CsbD family protein; KEGG: mlo:msl9551 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.755
Snov_2345
PFAM: protein of unknown function DUF1328; KEGG: azc:AZC_1464 hypothetical protein.
  
    0.669
Snov_1631
KEGG: mno:Mnod_7336 CsbD family protein.
   
    0.649
Snov_3980
PFAM: protein of unknown function DUF892; KEGG: mlo:mll4608 YcfI, putative structural proteins.
 
     0.623
Snov_3679
KEGG: met:M446_5383 CsbD family protein.
   
    0.619
Snov_3983
KEGG: pla:Plav_1139 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.
 
    0.540
Snov_3978
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rlg:Rleg_6701 short-chain dehydrogenase/reductase SDR.
       0.518
Snov_1667
KEGG: xau:Xaut_4387 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
   
    0.497
Snov_3977
PFAM: protein of unknown function DUF1452; KEGG: xau:Xaut_0450 hypothetical protein.
 
     0.459
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.