STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4085PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1695 extracellular ligand-binding receptor. (379 aa)    
Predicted Functional Partners:
Snov_4083
KEGG: met:M446_6491 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.951
Snov_4084
PFAM: inner-membrane translocator; KEGG: mrd:Mrad2831_6015 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.916
Snov_3601
KEGG: xau:Xaut_4062 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.910
Snov_2626
PFAM: inner-membrane translocator; KEGG: azc:AZC_0198 branched chain amino acid ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.896
Snov_4222
PFAM: inner-membrane translocator; KEGG: bja:blr3355 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.896
Snov_2130
PFAM: inner-membrane translocator; KEGG: xau:Xaut_3901 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.888
Snov_4082
KEGG: mno:Mnod_6584 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.885
Snov_3600
PFAM: inner-membrane translocator; KEGG: xau:Xaut_4061 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.856
Snov_4221
PFAM: inner-membrane translocator; KEGG: met:M446_5695 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.856
Snov_1645
PFAM: inner-membrane translocator; KEGG: azc:AZC_1542 putative branched-chain amino acid ABC-type transport permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.855
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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