STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4098PFAM: protein of unknown function DUF112 transmembrane; KEGG: rpa:RPA2320 TctA subunit of the tripartite tricarboxylate transport(TTT) family. (501 aa)    
Predicted Functional Partners:
Snov_4096
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0060 hypothetical protein.
    0.904
Snov_4097
PFAM: protein of unknown function DUF1468; KEGG: har:HEAR0416 hypothetical protein.
 
    0.878
Snov_0371
PFAM: conserved hypothetical protein; KEGG: reh:H16_B2308 extra-cytoplasmic solute receptor.
 
    0.823
Snov_1735
PFAM: conserved hypothetical protein; KEGG: dhd:Dhaf_1971 hypothetical protein.
 
    0.823
Snov_3576
PFAM: conserved hypothetical protein; KEGG: dhd:Dhaf_1971 hypothetical protein.
    0.823
Snov_0188
PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_2869 hypothetical protein.
    0.822
Snov_0203
PFAM: conserved hypothetical protein; KEGG: mms:mma_1291 tricarboxylate binding receptor.
 
    0.822
Snov_0904
PFAM: conserved hypothetical protein; KEGG: ara:Arad_7017 hypothetical protein.
 
    0.822
Snov_3243
PFAM: conserved hypothetical protein; KEGG: cti:RALTA_B0134 conserved hypothetical protein; putative exported protein, UPF0065.
    0.822
Snov_4336
PFAM: conserved hypothetical protein; KEGG: rhi:NGR_c25910 tricarboxylic transport.
 
    0.822
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.