STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4103KEGG: rec:RHECIAT_CH0002632 hypothetical protein. (68 aa)    
Predicted Functional Partners:
Snov_4102
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:RL2897 putative transmembrane component of ABC transporter.
       0.794
Snov_4101
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlg:Rleg_2427 binding-protein-dependent transport systems inner membrane component.
       0.773
Snov_4104
ABC transporter related protein; KEGG: rhi:NGR_b04050 predicted MalK, ABC-type sugar transport systems, ATPase component MalK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.773
Snov_4105
ABC transporter related protein; KEGG: rhi:NGR_b04060 predicted MalK, ABC-type sugar transport systems, ATPase component MalK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.773
Snov_4106
Glycerone kinase; KEGG: azc:AZC_4706 dihydroxyacetone kinase; PFAM: Dak kinase; Dak phosphatase.
       0.608
Snov_4107
Dihydroxyacetone kinase, L subunit; KEGG: rhi:NGR_b04080 putative phosphatase domain of the dihydroxyacetone kinase family; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase.
       0.552
Snov_4108
KEGG: rhi:NGR_b04090 putative PTS-dependent dihydroxyacetone kinase,phosphotransferase subunit; TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose subfamily IIA component.
       0.552
Snov_4109
KEGG: rlg:Rleg_2435 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
       0.551
Snov_4111
KEGG: rhi:NGR_b04120 hypothetical protein.
       0.551
Snov_4110
PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: rlg:Rleg_2436 PEP-utilizing protein; Belongs to the PEP-utilizing enzyme family.
       0.550
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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