STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4109KEGG: rlg:Rleg_2435 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr. (116 aa)    
Predicted Functional Partners:
Snov_4110
PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: rlg:Rleg_2436 PEP-utilizing protein; Belongs to the PEP-utilizing enzyme family.
 
 0.999
Snov_4387
KEGG: bbt:BBta_7372 PTS system phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr.
  
  
  0.970
Snov_4386
PFAM: PTS system fructose subfamily IIA component; KEGG: azc:AZC_4068 PTS system fructose subfamily IIA component.
 
 0.965
Snov_4108
KEGG: rhi:NGR_b04090 putative PTS-dependent dihydroxyacetone kinase,phosphotransferase subunit; TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose subfamily IIA component.
 
   
 0.899
Snov_4107
Dihydroxyacetone kinase, L subunit; KEGG: rhi:NGR_b04080 putative phosphatase domain of the dihydroxyacetone kinase family; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase.
 
  
 0.850
Snov_4111
KEGG: rhi:NGR_b04120 hypothetical protein.
       0.794
Snov_4112
KEGG: rlg:Rleg_2438 glycerone kinase; PFAM: Dak kinase.
 
  
 0.788
Snov_4106
Glycerone kinase; KEGG: azc:AZC_4706 dihydroxyacetone kinase; PFAM: Dak kinase; Dak phosphatase.
  
  
 0.719
Snov_2724
PTSINtr with GAF domain, PtsP; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; GAF domain protein; PEP-utilising protein mobile region; KEGG: xau:Xaut_2624 phosphoenolpyruvate-protein phosphotransferase PtsP; SMART: GAF domain protein; Belongs to the PEP-utilizing enzyme family.
  
 
 
 0.683
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
    0.658
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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