STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4129PFAM: protein of unknown function DUF1236; KEGG: azc:AZC_3141 hypothetical protein. (131 aa)    
Predicted Functional Partners:
Snov_1017
KEGG: noc:Noc_1765 transmembrane prediction.
  
    0.563
Snov_4128
PFAM: protein of unknown function DUF1236; KEGG: rec:RHECIAT_CH0001818 hypothetical protein.
       0.542
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
   
    0.536
Snov_3585
PFAM: Transglycosylase-associated protein; KEGG: bmc:BAbS19_I09150 transglycosylase-associated protein.
  
     0.486
Snov_1019
KEGG: noc:Noc_1764 cytochrome c, class I.
  
     0.460
Snov_3401
PFAM: Protein of unknown function DUF2125; KEGG: xau:Xaut_0016 hypothetical protein.
  
     0.425
Snov_4035
KEGG: xau:Xaut_0184 hypothetical protein.
  
    0.408
Snov_4130
PFAM: Acetamidase/Formamidase; KEGG: bra:BRADO5372 putative acetamidase/formamidase.
       0.407
Snov_0143
SH3 type 3 domain protein; KEGG: rle:RL3605 putative transmembrane protein; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein.
  
     0.404
Snov_2303
KEGG: azc:AZC_0408 hypothetical protein.
  
     0.404
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.