STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4136KEGG: pmy:Pmen_0700 inner-membrane translocator; TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (535 aa)    
Predicted Functional Partners:
Snov_4137
KEGG: tmz:Tmz1t_3933 UreA ABC transporter, permease protein UrtC; TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
Snov_4139
TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; KEGG: bpt:Bpet0299 putative branched-chain ABC transporter, ATP-binding protein; SMART: AAA ATPase.
 
 
 0.995
Snov_4138
TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: rpt:Rpal_4188 UreA ABC transporter, ATP-binding protein UrtD; SMART: AAA ATPase.
 
 0.989
Snov_1385
KEGG: rpt:Rpal_4189 UreA ABC transporter, permease protein UrtC; TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.972
Snov_2422
KEGG: bid:Bind_0978 UreA ABC transporter, permease protein UrtC; TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.968
Snov_1387
TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; KEGG: rpd:RPD_3506 ABC transporter related; SMART: AAA ATPase.
 
 0.959
Snov_1386
TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: rpd:RPD_3507 ABC transporter related; SMART: AAA ATPase.
 
 0.955
Snov_2423
KEGG: bid:Bind_0979 UreA ABC transporter, ATP-binding protein UrtD; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related.
 
 0.954
Snov_2424
TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; KEGG: bid:Bind_0980 UreA ABC transporter, ATP-binding protein UrtE; SMART: AAA ATPase.
 
 
 0.948
Snov_3246
ABC transporter related protein; KEGG: mdi:METDI4403 putative leucine/isoleucine/valine transporter subunit (ATP-binding component of ABC superfamily) (LivF); PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.941
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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