STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4159KEGG: bam:Bamb_4537 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (311 aa)    
Predicted Functional Partners:
Snov_4158
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ent:Ent638_2727 binding-protein-dependent transport systems inner membrane component.
 0.998
Snov_4160
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2944 binding-protein-dependent transport systems inner membrane component.
 0.998
Snov_4161
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bgl:bglu_1g18340 ABC glycine betaine/choline transporter, periplasmic ligand binding protein.
 0.998
Snov_2552
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    
 0.679
Snov_4270
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_0718 putative dipeptide/oligopeptide/nickel ABC transporter, permease protein.
 
      0.605
Snov_3928
Sulfate ABC transporter, inner membrane subunit CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.578
Snov_3183
PFAM: ABC-2 type transporter; KEGG: rle:pRL90045 putative ABC transporter permease component.
      0.523
Snov_4156
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pst:PSPTO_0258 D-isomer specific 2-hydroxyacid dehydrogenase family protein.
       0.468
Snov_4157
Agmatinase; KEGG: bte:BTH_II0784 agmatinase, putative; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
       0.468
Snov_4162
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psa:PST_0739 ABC transporter permease.
       0.465
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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