STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4209KEGG: xau:Xaut_4634 hypothetical protein. (440 aa)    
Predicted Functional Partners:
Snov_4208
KEGG: sfu:Sfum_1461 hypothetical protein.
 
   
 0.955
Snov_3807
PFAM: protein of unknown function DUF255; KEGG: nha:Nham_0107 hypothetical protein.
    
 
 0.761
Snov_1973
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: rle:pRL110445 putative peptidase/protease.
  
 
 0.756
Snov_0811
Cell division protein FtsK/SpoIIIE; KEGG: azc:AZC_3264 putative DNA segregation ATPase; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.700
Snov_3413
KEGG: azc:AZC_0096 FtsK protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase.
   
 
 0.700
Snov_3432
Carboxyl-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: azc:AZC_4133 peptidase S41A protein; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family.
  
 
 0.645
Snov_0472
PFAM: glycoside hydrolase family 5; KEGG: aca:ACP_0988 glycosyl hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 
 0.644
Snov_4210
KEGG: rhi:NGR_b13620 putative 3-hydroxyalkanoate synthetase.
 
     0.557
Snov_0555
PFAM: transcriptional regulator domain protein; KEGG: oca:OCAR_6759 transcriptional regulator, CadC-family.
 
 
 0.544
Snov_0469
PFAM: phosphopantetheine-binding; KEGG: hypothetical protein.
   
 
 0.533
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.