STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4210KEGG: rhi:NGR_b13620 putative 3-hydroxyalkanoate synthetase. (737 aa)    
Predicted Functional Partners:
Snov_4211
KEGG: rhi:NGR_b13630 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase.
  
 0.978
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 0.728
Snov_4212
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rhi:NGR_b13650 NADH-enoyl acyl carrier protein reductase.
  
    0.713
Snov_1362
KEGG: xau:Xaut_3523 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold.
 
     0.671
Snov_4208
KEGG: sfu:Sfum_1461 hypothetical protein.
 
     0.625
Snov_4209
KEGG: xau:Xaut_4634 hypothetical protein.
 
     0.557
Snov_0150
PFAM: Citrate transporter; KEGG: msl:Msil_2569 citrate transporter.
  
     0.464
Snov_1023
PFAM: extracellular solute-binding protein family 1; KEGG: bcj:BCAM1379 ABC transporter substrate-binding protein.
  
     0.452
Snov_1368
PFAM: phospholipase/Carboxylesterase; KEGG: azc:AZC_1806 putative esterase.
  
     0.437
Snov_3656
KEGG: msl:Msil_1042 hypothetical protein.
  
   
 0.433
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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