STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4244KEGG: bja:bll3781 hypothetical protein. (109 aa)    
Predicted Functional Partners:
Snov_4243
PFAM: cytochrome c oxidase subunit III; KEGG: bja:bll3782 cytochrome c oxidase.
   
 0.984
Snov_4242
PFAM: cytochrome c oxidase subunit III; KEGG: mlo:mlr1042 cytochrome c oxidase subunit III.
   
 0.967
Snov_4240
PFAM: cytochrome c oxidase subunit II; KEGG: mlo:mlr1039 cytochrome c oxidase subunit II.
 
   
 0.912
Snov_4241
TIGRFAM: cytochrome c oxidase, subunit I; KEGG: rhi:NGR_c25530 cytochrome c oxidase polypeptide I/III; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.912
Snov_4239
PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: mlo:mll1046 cytochrome c oxidase subunit I.
 
     0.606
Snov_2479
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
     
  0.499
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.