STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4245Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rle:RL1202 LysR family transcriptional regulator. (298 aa)    
Predicted Functional Partners:
Snov_4247
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: azc:AZC_1334 putative pyridoxine 5`-phosphate oxidase protein.
 
     0.672
Snov_4246
KEGG: rle:RL1203 metallo-beta-lactamase family methyl parathion hydrolase.
 
    0.663
Snov_2872
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: zmn:Za10_1368 transcriptional regulator, LysR family.
  
     0.660
Snov_4287
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dsh:Dshi_1431 LysR family transcriptional regulator.
  
     0.652
Snov_1244
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpy:Bphyt_4124 transcriptional regulator, LysR family.
  
     0.647
Snov_0191
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dac:Daci_4360 LysR family transcriptional regulator.
  
     0.620
Snov_0196
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: jan:Jann_2940 LysR family transcriptional regulator.
  
     0.597
Snov_4342
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_2783 transcriptional regulator.
  
     0.589
Snov_0418
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: acr:Acry_2830 LysR family transcriptional regulator.
  
     0.548
Snov_1729
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rle:pRL90211 LysR family transcriptional regulator.
  
     0.518
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.