STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4250PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: oan:Oant_4509 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family. (317 aa)    
Predicted Functional Partners:
Snov_1299
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pin:Ping_1565 amidohydrolase-like protein.
  
 0.913
Snov_3250
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mdi:METDI4399 putative N-carbamyl-D-amino acid amidohydrolase.
  
 0.913
Snov_3492
KEGG: pap:PSPA7_0384 N-carbamoylputrescine amidase; TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
 0.913
Snov_3939
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: azc:AZC_0333 ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.912
aguA
TIGRFAM: agmatine deiminase; KEGG: pla:Plav_1144 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase.
    
 0.906
Snov_0934
PFAM: aminotransferase class-III; KEGG: xau:Xaut_2727 putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 
  0.901
argD
TIGRFAM: acetylornithine and succinylornithine aminotransferase; KEGG: azc:AZC_4028 acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 0.697
argH
KEGG: xau:Xaut_1738 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
     
 0.531
arcB
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
 0.528
arcB-2
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
 0.528
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.