STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4265PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rle:pRL120143 putative short-chain dehydrogenase/reductase. (253 aa)    
Predicted Functional Partners:
Snov_0247
PFAM: Beta-ketoacyl synthase; KEGG: azc:AZC_4643 3-oxoacyl-(acyl-carrier-protein) synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.926
fabA
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.
  
 0.920
Snov_0941
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bbt:BBta_3521 putative 3-hydroxymyristoyl-acyl carrier protein dehydratase FabZ-like protein.
  
 0.920
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
  
 0.920
fabH
3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
 
 
 0.912
Snov_4267
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_2740 short-chain dehydrogenase/reductase SDR.
 
    
0.822
Snov_4268
PFAM: NAD-dependent epimerase/dehydratase; KEGG: mno:Mnod_8560 NAD-dependent epimerase/dehydratase.
 
   0.811
Snov_4266
Dihydropyrimidinase; KEGG: mno:Mnod_7926 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase.
   
   0.781
Snov_4269
ABC transporter related protein; KEGG: gbe:GbCGDNIH1_1987 oligopeptide transport ATP-binding protein OppF; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase.
       0.768
Snov_4270
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_0718 putative dipeptide/oligopeptide/nickel ABC transporter, permease protein.
       0.768
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.