STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4277PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: met:M446_3498 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (287 aa)    
Predicted Functional Partners:
Snov_1550
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN0400 amidohydrolase.
  
  
 
0.925
Snov_0502
KEGG: ara:Arad_3974 betaine-aldehyde dehydrogenase protein; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.907
Snov_4278
PFAM: amidohydrolase; KEGG: met:M446_3497 amidohydrolase.
 
     0.828
Snov_4276
KEGG: met:M446_3499 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.802
Snov_4275
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_3500 binding-protein-dependent transport systems inner membrane component.
       0.778
aguA
TIGRFAM: agmatine deiminase; KEGG: pla:Plav_1144 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase.
 
  
 0.758
Snov_1299
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pin:Ping_1565 amidohydrolase-like protein.
  
     0.733
Snov_4274
PFAM: extracellular solute-binding protein family 3; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: bra:BRADO3096 putative ABC transporter periplasmic substrate-binding protein.
 
     0.704
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.