STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4281TRAP dicarboxylate transporter, DctP subunit; KEGG: bbr:BB3954 putative periplasmic solute-binding transport protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria. (334 aa)    
Predicted Functional Partners:
Snov_4283
TRAP dicarboxylate transporter, DctM subunit; KEGG: bpa:BPP3521 putative inner membrane protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
 0.953
Snov_4282
KEGG: bbr:BB3955 putative inner membrane protein.
  
  
 0.828
Snov_2528
KEGG: pmu:PM1653 hypothetical protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
 0.805
Snov_3666
KEGG: aav:Aave_0751 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
 0.805
Snov_0540
KEGG: rpa:RPA1784 TRAP dicarboxylate family transporter DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
 0.804
Snov_3264
KEGG: atc:AGR_L_3348 hypothetical protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
 0.804
Snov_1906
KEGG: vap:Vapar_5332 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
 0.803
Snov_1577
KEGG: smd:Smed_5136 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
 0.797
Snov_3665
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: vap:Vapar_3328 tripartite ATP-independent periplasmic transporter DctQ component.
 
  
 0.751
Snov_4284
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: msm:MSMEG_6296 5-exo-alcohol dehydrogenase.
       0.736
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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