STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4294PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3340 binding-protein-dependent transport systems inner membrane component. (276 aa)    
Predicted Functional Partners:
Snov_4296
KEGG: bmc:BAbS19_II04030 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
     0.948
Snov_4297
KEGG: bcj:BCAL1742 extracellular solute-binding protein.
 
     0.904
Snov_4295
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_3345 ABC transporter membrane spanning protein.
 
    
0.856
Snov_2890
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bmj:BMULJ_05417 spermidine/putrescine transport system permease protein.
 
  
 0.636
Snov_0516
ABC transporter related protein; KEGG: tga:TGAM_1014 ABC-type transport system, ATPase component, putative Fe3+ transporter (FbpC/AfuC); PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    0.588
Snov_4305
ABC transporter related protein; KEGG: oca:OCAR_6182 multiple sugar-binding transport ATP-binding protein MsmK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    0.580
Snov_4163
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A2046 binding-protein dependent transport system inner membrane protein.
 
  
 0.554
Snov_2867
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VP1337 putative permease of ABC transporter.
 
  
 0.522
potA-3
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
    0.521
potA-4
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
    0.517
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.