STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4297KEGG: bcj:BCAL1742 extracellular solute-binding protein. (387 aa)    
Predicted Functional Partners:
Snov_4295
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_3345 ABC transporter membrane spanning protein.
 
     0.906
Snov_4294
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_3340 binding-protein-dependent transport systems inner membrane component.
 
     0.904
Snov_4296
KEGG: bmc:BAbS19_II04030 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
     0.871
Snov_4298
PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: dfe:Dfer_3264 glucosamine/galactosamine-6-phosphate isomerase.
       0.621
Snov_4299
KEGG: vei:Veis_1391 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
       0.613
Snov_3530
PFAM: Oxidoreductase domain; oxidoreductase domain protein; KEGG: bac:BamMC406_5800 oxidoreductase domain-containing protein.
  
     0.489
Snov_2038
KEGG: azc:AZC_0292 transcriptional regulatory protein; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
     0.472
Snov_1422
PFAM: alpha/beta hydrolase fold; KEGG: rle:RL2912 hypothetical protein.
  
     0.440
Snov_3127
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rhi:NGR_c33170 putative LysE type translocator.
  
     0.439
Snov_4300
PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_4658 extracellular solute-binding protein.
       0.429
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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