STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4306KEGG: mrd:Mrad2831_2073 NUDIX hydrolase. (67 aa)    
Predicted Functional Partners:
Snov_4304
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oca:OCAR_6183 binding-protein-dependent transport systems inner membrane component.
  
    0.650
Snov_4305
ABC transporter related protein; KEGG: oca:OCAR_6182 multiple sugar-binding transport ATP-binding protein MsmK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.642
Snov_4303
PFAM: extracellular solute-binding protein family 1; KEGG: oca:OCAR_6184 extracellular solute-binding protein, family 1.
       0.469
Snov_4065
KEGG: atc:AGR_pAT_354 spermidine/putrescine-binding protein; PotD.
  
     0.462
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.415
Snov_2255
PFAM: MltA-interacting MipA family protein; KEGG: azc:AZC_1663 hypothetical protein.
  
     0.400
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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