STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4328PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: vei:Veis_4519 glucose-methanol-choline oxidoreductase. (542 aa)    
Predicted Functional Partners:
betB
Putative transcriptional regulator, TetR family; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
 0.927
Snov_4473
KEGG: mpo:Mpop_1502 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase.
    
 0.811
Snov_3983
KEGG: pla:Plav_1139 SNARE associated Golgi protein; PFAM: SNARE associated Golgi protein; phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.
     
 0.803
Snov_0167
PFAM: ribosomal RNA adenine methylase transferase; KEGG: mes:Meso_0915 methyltransferase type 12.
     
  0.800
psd
Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
  0.800
Snov_2498
KEGG: bbt:BBta_1882 phosphatidyl-N-methylethanolamine N-methyltransferase; PFAM: Methyltransferase type 11.
     
  0.800
Snov_4025
PFAM: ribosomal RNA adenine methylase transferase; KEGG: azc:AZC_0161 phospholipid N-methyltransferase.
     
  0.800
Snov_4329
KEGG: vei:Veis_4520 succinate-semialdehyde dehydrogenase (NAD(P)(+)); PFAM: Aldehyde Dehydrogenase.
 
  
 0.716
Snov_4327
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4518 binding-protein-dependent transport systems inner membrane component.
  
    0.621
Snov_4325
PFAM: extracellular solute-binding protein family 1; KEGG: vei:Veis_4516 extracellular solute-binding protein.
       0.620
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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