STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_4507KEGG: asa:ASA_0612 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Snov_4506
KEGG: pst:PSPTOA0070 hypothetical protein.
       0.773
Snov_4505
KEGG: tfu:Tfu_1160 hypothetical protein.
       0.757
Snov_4498
PFAM: integrase family protein; KEGG: nwi:Nwi_1140 phage integrase.
       0.751
Snov_4499
KEGG: mpo:Mpop_2749 hypothetical protein.
       0.751
Snov_4500
KEGG: rsk:RSKD131_1491 hypothetical protein.
       0.751
Snov_4501
KEGG: rpf:Rpic12D_2302 hypothetical protein.
       0.751
Snov_4502
SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: mrd:Mrad2831_2239 DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain.
       0.751
Snov_4503
Hypothetical protein; KEGG: kra:Krad_2242 AAA ATPase.
       0.751
Snov_4504
PFAM: Protein of unknown function DUF2312; KEGG: xau:Xaut_3694 hypothetical protein; Belongs to the UPF0335 family.
       0.751
Snov_4508
KEGG: ade:Adeh_3302 FAD dependent oxidoreductase.
       0.465
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.