STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dsui_0153Cupin domain-containing protein; PFAM: Cupin domain; manually curated. (117 aa)    
Predicted Functional Partners:
Dsui_2210
PFAM: Bacterial regulatory proteins, gntR family; UTRA domain; manually curated.
  
    0.572
Dsui_0152
PAS domain S-box; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
       0.556
nrsf
Hypothetical protein; Probably an anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-F (SigF), which responds to (hypo)chlorite. ECF sigma factors are held in an inactive form by a cognate anti-sigma factor (Probable); Belongs to the NrsF anti-sigma-F factor family.
       0.542
sigF
RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Extracytoplasmic function (ECF) sigma factors are held in an inactive form by a cognate anti-sigma factor (NrsF in this case) until they are released (Probable). Regulates expression of only a few genes (Dsui_0154 to Dsui_0159) in response to (hypo)chlorite, conferring resistance to reactive chlorine species (RCS) during oxic growth.
  
    0.540
Dsui_1431
Chemotaxis protein CheC, inhibitor of MCP methylation.
    
   0.404
Your Current Organism:
Azospira oryzae
NCBI taxonomy Id: 640081
Other names: A. oryzae PS, Azospira oryzae PS, Dechlorosoma suillum PS, Dechlorosoma suillum str. PS, Dechlorosoma suillum strain PS
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.