STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dsui_2331Heat shock protein; PFAM: META domain; Uncharacterized lipoprotein NlpE involved in copper resistance. (383 aa)    
Predicted Functional Partners:
Dsui_2332
PFAM: Permease family; TIGRFAM: uracil-xanthine permease.
       0.651
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.647
dusC
tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
       0.446
Dsui_0544
Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.416
Dsui_1659
PFAM: Uncharacterized protein conserved in bacteria (DUF2325).
    
   0.416
Dsui_1750
Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.416
Dsui_3377
PFAM: Uncharacterized protein conserved in bacteria (DUF2325).
    
   0.416
Dsui_2213
PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
    
 
 0.410
Your Current Organism:
Azospira oryzae
NCBI taxonomy Id: 640081
Other names: A. oryzae PS, Azospira oryzae PS, Dechlorosoma suillum PS, Dechlorosoma suillum str. PS, Dechlorosoma suillum strain PS
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.