STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dsui_2587Type IV secretory pathway, VirB10 component; PFAM: Bacterial conjugation TrbI-like protein. (441 aa)    
Predicted Functional Partners:
Dsui_2586
Type IV secretory pathway, VirB9 component; PFAM: Conjugal transfer protein.
 
 0.999
Dsui_2577
TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family.
 
 
 0.997
Dsui_2588
Type IV secretory pathway, VirB9 component; PFAM: Conjugal transfer protein.
  
 
 0.987
Dsui_2585
Type IV secretory pathway, component VirB8; PFAM: VirB8 protein.
    
 0.981
Dsui_2575
Hypothetical protein; TIGRFAM: P-type conjugative transfer protein TrbJ.
    
 0.930
Dsui_2589
Type II secretory pathway, component PulD; PFAM: Bacterial type II and III secretion system protein; TIGRFAM: type IVB pilus formation outer membrane protein, R64 PilN family.
 
    0.791
Dsui_2797
LysM repeat-containing protein; PFAM: Transglycosylase SLT domain; MLTD_N; LysM domain.
   
 
 0.777
Dsui_2854
Hemolysin activation/secretion protein; PFAM: Haemolysin secretion/activation protein ShlB/FhaC/HecB; POTRA domain, ShlB-type; manually curated.
   
    0.751
Dsui_2590
PFAM: Pilin accessory protein (PilO).
       0.686
Dsui_2572
Conjugative coupling factor TraD, TOL family; PFAM: Type IV secretion-system coupling protein DNA-binding domain; TIGRFAM: conjugative coupling factor TraD, TOL family; conjugative coupling factor TraD, SXT/TOL subfamily.
   
 
 0.678
Your Current Organism:
Azospira oryzae
NCBI taxonomy Id: 640081
Other names: A. oryzae PS, Azospira oryzae PS, Dechlorosoma suillum PS, Dechlorosoma suillum str. PS, Dechlorosoma suillum strain PS
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