STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dsui_3012Hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA). (393 aa)    
Predicted Functional Partners:
Dsui_3009
Ni,Fe-hydrogenase I large subunit; PFAM: Nickel-dependent hydrogenase; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 0.999
Dsui_1152
Ni,Fe-hydrogenase I large subunit; PFAM: Nickel-dependent hydrogenase.
 
 0.998
Dsui_1165
Ni,Fe-hydrogenase I large subunit; PFAM: Nickel-dependent hydrogenase.
 
 
 0.959
Dsui_3010
PFAM: Polysulphide reductase, NrfD.
 
  
 0.955
Dsui_3006
PFAM: Protein of unknown function (DUF3457); TIGRFAM: [NiFe] hydrogenase assembly chaperone, HybE family.
 
 
 0.929
Dsui_3008
PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease.
 
  
 0.927
Dsui_1153
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA).
  
  
 
0.926
Dsui_3007
PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF.
 
 
 0.864
Dsui_3011
Fe-S-cluster-containing hydrogenase subunit; PFAM: TAT (twin-arginine translocation) pathway signal sequence; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
  
 0.864
Dsui_1163
Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB.
 
  
 0.828
Your Current Organism:
Azospira oryzae
NCBI taxonomy Id: 640081
Other names: A. oryzae PS, Azospira oryzae PS, Dechlorosoma suillum PS, Dechlorosoma suillum str. PS, Dechlorosoma suillum strain PS
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