Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Srot_0010KEGG: rop:ROP_34640 hypothetical membrane protein; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein. (561 aa)    
Predicted Functional Partners:
Srot_0011
KEGG: mab:MAB_4937 hypothetical protein.
      0.946
Srot_0009
Glycoprotein; KEGG: rha:RHA1_ro03643 glycoprotein.
 
     0.866
Srot_0008
PFAM: NUDIX hydrolase; KEGG: mjl:Mjls_5774 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.816
Srot_0374
PFAM: cell cycle protein; KEGG: rop:ROP_35140 putative cell division protein RodA; Belongs to the SEDS family.
  
   
 0.678
Srot_0007
TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: rha:RHA1_ro03641 tRNA nucleotidyltransferase; SMART: metal-dependent phosphohydrolase HD region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.657
Srot_1081
KEGG: rop:ROP_08220 peptidoglycan synthase FtsI; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
   
 0.606
Srot_0012
KEGG: saq:Sare_5095 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
       0.556
Srot_1106
Glycosyl transferase family 51; KEGG: rop:ROP_42240 penicillin-binding protein 1; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; PASTA domain containing protein; SMART: PASTA domain containing protein.
  
  
 0.546
Srot_0470
PFAM: DNA polymerase III delta; KEGG: rha:RHA1_ro01286 DNA polymerase III delta subunit.
  
  
 0.544
Srot_0006
PFAM: protein of unknown function DUF179; KEGG: mbt:JTY_0039 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
       0.540
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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