STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0063PFAM: Terminase; KEGG: bln:Blon_1811 phage terminase. (471 aa)    
Predicted Functional Partners:
Srot_0064
PFAM: protein of unknown function DUF1483; KEGG: rer:RER_22740 hypothetical protein.
       0.794
Srot_0065
KEGG: jde:Jden_2308 hypothetical protein.
       0.793
Srot_0062
KEGG: blj:BLD_1160 hypothetical protein.
       0.776
Srot_0066
KEGG: lxx:Lxx03900 hypothetical protein.
       0.625
Srot_0067
KEGG: bln:Blon_1815 phage structural protein.
     
 0.563
Srot_0060
KEGG: snm:SP70585_0056 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease.
  
  
 0.557
Srot_0075
KEGG: ami:Amir_3249 hypothetical protein.
 
     0.535
Srot_0061
Hypothetical protein; KEGG: acr:Acry_0583 riboflavin biosynthesis protein RibF.
       0.427
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.