STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0136PFAM: Propeptide PepSY amd peptidase M4; PepSY- associated TM helix domain protein; KEGG: msm:MSMEG_6570 integral membrane protein. (488 aa)    
Predicted Functional Partners:
Srot_0137
KEGG: ami:Amir_2588 tetratricopeptide TPR_2 repeat protein.
       0.794
Srot_0134
Extracellular solute-binding protein family 3; KEGG: rha:RHA1_ro02194 amino acid ABC transporter ATP-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
       0.566
Srot_0135
KEGG: rha:RHA1_ro02193 hypothetical protein.
       0.566
Srot_0138
PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: mul:MUL_4847 integral membrane protein.
       0.525
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.