STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0179PFAM: NLP/P60 protein; KEGG: mjl:Mjls_2702 NLP/P60 protein. (164 aa)    
Predicted Functional Partners:
Srot_0831
KEGG: gbr:Gbro_3337 hypothetical protein.
   
  
 0.531
Srot_2239
PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: mab:MAB_1130 hypothetical protein.
  
  
 0.462
Srot_0178
PFAM: major facilitator superfamily MFS_1; KEGG: svi:Svir_32050 nitrate/nitrite transporter.
       0.443
Srot_0588
PFAM: Domain of unknown function DUF1906; KEGG: mav:MAV_1648 secreted protein.
   
  
 0.403
Srot_0591
PFAM: Domain of unknown function DUF1906; KEGG: mpa:MAP2334c hypothetical protein.
   
  
 0.403
Srot_0592
PFAM: Domain of unknown function DUF1906; KEGG: mbt:JTY_2540 hypothetical protein.
   
  
 0.403
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.