STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0200KEGG: pzu:PHZ_c2416 hypothetical protein. (233 aa)    
Predicted Functional Partners:
Srot_0197
PFAM: periplasmic solute binding protein; KEGG: mav:MAV_0583 periplasmic solute binding protein family protein.
       0.741
Srot_0198
KEGG: rha:RHA1_ro04478 ABC transporter, ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.741
Srot_0199
PFAM: ABC-3 protein; KEGG: nfa:nfa4430 putative ABC transporter membrane protein.
       0.741
Srot_0201
KEGG: hypothetical protein.
       0.527
Srot_0202
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.527
Srot_0196
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: msm:MSMEG_0406 acyl-CoA-dehydrogenase.
       0.496
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.