STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0218KEGG: rop:ROP_36780 hypothetical membrane protein. (145 aa)    
Predicted Functional Partners:
Srot_0217
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: mva:Mvan_0932 permease for cytosine/purines, uracil, thiamine, allantoin.
       0.558
Srot_0219
PFAM: alpha/beta hydrolase fold; KEGG: mmi:MMAR_0983 lipase/esterase LipG2.
       0.550
Srot_0220
PFAM: alpha/beta hydrolase fold; KEGG: mab:MAB_3880 lipase/esterase LipG.
       0.546
Srot_2741
PFAM: beta-lactamase; KEGG: rop:ROP_09270 hypothetical protein.
  
     0.531
Srot_0216
PFAM: regulatory protein TetR; KEGG: mab:MAB_3527 TetR family transcriptional regulator.
       0.445
pup
Protein of unknown function DUF797; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.
  
     0.441
Srot_0023
KEGG: rop:ROP_49090 hypothetical protein.
  
     0.421
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.