STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0280KEGG: svi:Svir_39350 predicted integral membrane protein. (486 aa)    
Predicted Functional Partners:
Srot_0278
KEGG: gbr:Gbro_4746 hypothetical protein.
 
     0.732
Srot_3053
PFAM: protein of unknown function DUF1416; KEGG: mmi:MMAR_4869 sulphur metabolism protein, SseC2.
  
     0.697
Srot_0279
KEGG: mbt:JTY_3378 secreted protein antigen.
       0.693
Srot_1269
PFAM: SAF domain protein; KEGG: mab:MAB_1083c hypothetical protein.
  
     0.661
Srot_0488
PFAM: ThiJ/PfpI domain protein; KEGG: afo:Afer_1435 ThiJ/PfpI domain protein.
  
    0.654
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.616
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
  
     0.605
Srot_1133
PFAM: amino acid-binding ACT domain protein; KEGG: rop:ROP_65240 hypothetical protein.
  
     0.587
Srot_1573
PFAM: Methionine synthase vitamin-B12 independent; KEGG: mbt:JTY_3032 hypothetical protein.
  
     0.581
Srot_1195
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.576
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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