STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0427KEGG: mab:MAB_0539 hypothetical protein. (452 aa)    
Predicted Functional Partners:
Srot_1589
TIGRFAM: DivIVA domain; KEGG: nml:Namu_2146 hypothetical protein.
  
    0.773
Srot_2148
KEGG: nfa:nfa9540 hypothetical protein.
  
     0.760
Srot_2875
KEGG: rop:ROP_50270 hypothetical protein.
  
     0.744
Srot_1089
KEGG: gbr:Gbro_1679 hypothetical protein.
  
     0.743
Srot_0764
KEGG: nfa:nfa12650 hypothetical protein.
  
    0.740
Srot_0210
KEGG: rha:RHA1_ro06355 hypothetical protein.
  
     0.735
Srot_0955
KEGG: mab:MAB_3030c hypothetical protein.
  
     0.733
Srot_1133
PFAM: amino acid-binding ACT domain protein; KEGG: rop:ROP_65240 hypothetical protein.
  
    0.732
Srot_1015
KEGG: hypothetical protein.
  
     0.727
Srot_2289
KEGG: sen:SACE_5996 hypothetical protein.
  
     0.727
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.