STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0437PFAM: high-affinity nickel-transporter; KEGG: mab:MAB_1897c high-affinity nickel- transporter NicT; Belongs to the NiCoT transporter (TC 2.A.52) family. (273 aa)    
Predicted Functional Partners:
Srot_0438
PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: sen:SACE_4096 nucleoside-diphosphate sugar epimerase.
       0.773
Srot_0439
KEGG: ami:Amir_0529 deoxyribodipyrimidine photo- lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein.
       0.773
Srot_1710
PFAM: phosphoesterase; KEGG: cjk:jk0010 putative acid phosphatase.
  
     0.724
Srot_0300
PFAM: Beta-ketoacyl synthase; KEGG: mab:MAB_4608 3-oxoacyl-(acyl carrier protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
      0.570
Srot_1305
KEGG: mab:MAB_2716c manganese transport transmembrane protein.
  
   
 0.481
Srot_0436
KEGG: hypothetical protein.
       0.451
Srot_1146
PFAM: Peptidase S53 propeptide; peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bph:Bphy_5054 peptidase S53 propeptide.
  
     0.429
Srot_0552
PFAM: major facilitator superfamily MFS_1; KEGG: mmi:MMAR_2797 sialic acid-transport integral membrane protein NanT.
  
     0.428
Srot_1399
PFAM: Peptidase S53 propeptide; KEGG: aac:Aaci_0759 peptidase S53 propeptide.
  
     0.422
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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