STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0472PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mab:MAB_0983c zinc-containing alcohol dehydrogenase. (379 aa)    
Predicted Functional Partners:
Srot_1491
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: kra:Krad_2715 alcohol dehydrogenase GroES domain protein.
  
 
0.938
Srot_1835
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: kra:Krad_0345 alcohol dehydrogenase GroES domain protein.
  
 
0.936
Srot_1892
PFAM: Aldehyde Dehydrogenase; KEGG: mva:Mvan_0105 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.913
Srot_1937
PFAM: Aldehyde Dehydrogenase; KEGG: rop:ROP_63370 piperideine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.913
Srot_2059
KEGG: nfa:nfa29950 putative aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.913
Srot_0768
KEGG: msm:MSMEG_1839 alkane 1-monooxygenase; PFAM: fatty acid desaturase.
     
 0.900
Srot_2762
KEGG: sco:SCO6783 hypothetical protein.
      0.835
Srot_0471
PFAM: thioesterase superfamily protein; KEGG: rha:RHA1_ro01573 thioesterase.
     
 0.782
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.648
Srot_2772
PFAM: putative esterase; LGFP repeat protein; KEGG: nfa:nfa1840 putative esterase.
  
 
 0.507
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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