STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0551Isochorismatase; KEGG: mab:MAB_4406 isochorismatase/phenazine biosynthesis protein PhzD; PFAM: isochorismatase hydrolase. (243 aa)    
Predicted Functional Partners:
Srot_0739
PFAM: AMP-dependent synthetase and ligase; KEGG: rop:ROP_23290 2,3-dihydroxybenzoate-AMP ligase.
 
 0.995
Srot_0737
PFAM: MbtH domain protein; KEGG: mbt:JTY_2385 hypothetical protein.
 
  
 0.896
Srot_2767
PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Acyl transferase; Thioesterase; KEGG: rha:RHA1_ro04065 polyketide synthase.
  
  
 0.802
Srot_2434
PFAM: condensation domain protein; AMP-dependent synthetase and ligase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: mab:MAB_2258 peptide synthetase and polyketide synthase.
 
  
 0.734
Srot_1344
KEGG: scl:sce8261 polyketide synthase type I; PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Thioesterase.
  
  
 0.720
Srot_1345
Amino acid adenylation domain protein; KEGG: sma:SAV_3642 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
 
  
 0.646
Srot_2431
Amino acid adenylation domain protein; KEGG: mab:MAB_2255 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
 
  
 0.642
Srot_1312
Amino acid adenylation domain protein; KEGG: nfa:nfa7660 putative non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding.
 
  
 0.634
Srot_2436
Amino acid adenylation domain protein; KEGG: rop:ROP_23240 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase.
 
  
 0.610
Srot_1547
PFAM: 4'-phosphopantetheinyl transferase; KEGG: rha:RHA1_ro06650 phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
 
  
 0.603
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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