STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0572KEGG: nfa:nfa1800 hypothetical protein. (622 aa)    
Predicted Functional Partners:
Srot_0571
PFAM: UbiA prenyltransferase; KEGG: rha:RHA1_ro04056 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.952
Srot_0570
KEGG: rer:RER_02120 galactofuranosyltransferase.
 
  
 0.868
Srot_2776
PFAM: cell wall arabinan synthesis protein; KEGG: mbt:JTY_3858 integral membrane indolylacetylinositol arabinosyltransferase.
  
  
 0.866
Srot_2777
PFAM: cell wall arabinan synthesis protein; KEGG: gbr:Gbro_0241 cell wall arabinan synthesis protein.
  
  
 0.863
Srot_2164
PFAM: coagulation factor 5/8 type domain protein; KEGG: rha:RHA1_ro05192 hypothetical protein.
  
   
 0.829
Srot_2770
PFAM: cutinase; KEGG: rop:ROP_39400 hypothetical protein.
 
     0.825
Srot_0569
TIGRFAM: UDP-galactopyranose mutase; KEGG: rha:RHA1_ro04053 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; FAD dependent oxidoreductase.
       0.824
Srot_2252
PFAM: cell wall arabinan synthesis protein; KEGG: gbr:Gbro_0245 cell wall arabinan synthesis protein.
  
  
 0.817
Srot_2818
KEGG: mjl:Mjls_5383 putative transmembrane protein.
      
 0.817
Srot_1609
KEGG: mab:MAB_4264c hypothetical protein.
 
     0.770
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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