STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0578KEGG: nfa:nfa10720 hypothetical protein. (103 aa)    
Predicted Functional Partners:
Srot_1144
PFAM: UspA domain protein; KEGG: mab:MAB_2312 hypothetical protein.
  
   
 0.820
nucS
Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
     
 0.710
Srot_2091
KEGG: mgi:Mflv_2201 hypothetical protein.
 
 
 0.524
Srot_0579
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: rer:RER_38940 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.515
Srot_0576
PFAM: Transglycosylase domain protein; KEGG: mbt:JTY_2397 putative resuscitation-promoting factor.
  
    0.514
Srot_0577
KEGG: mav:MAV_0098 hypothetical protein.
  
    0.514
Srot_2197
TIGRFAM: anti-sigma factor; KEGG: mpa:MAP3323c hypothetical protein.
  
 
 0.480
Srot_2261
KEGG: mmi:MMAR_3543 hypothetical protein.
  
 
 0.480
Srot_2541
PFAM: protein of unknown function DUF305; KEGG: gbr:Gbro_4415 protein of unknown function DUF305.
  
     0.429
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.426
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.