STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiB-2Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (92 aa)    
Predicted Functional Partners:
Srot_2270
SMART: regulatory protein MerR; KEGG: rop:ROP_06380 putative MerR family transcriptional regulator.
  
   
 0.819
Srot_0620
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.766
Srot_2120
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cjk:jk2065 single-stranded DNA-binding protein.
  
     0.766
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
   
 0.755
Srot_1963
PFAM: Protein of unknown function DUF2469; KEGG: gbr:Gbro_2093 protein of unknown function DUF2469.
  
     0.755
nucS
Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.711
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.698
Srot_1505
PFAM: protein of unknown function DUF501; KEGG: gbr:Gbro_1572 protein of unknown function DUF501.
  
     0.636
Srot_1395
KEGG: rer:RER_31660 helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DSH domain protein; SMART: DEAD-like helicase; helicase domain protein.
  
     0.633
Srot_0215
KEGG: rer:RER_21990 hypothetical protein.
  
     0.630
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.