STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0768KEGG: msm:MSMEG_1839 alkane 1-monooxygenase; PFAM: fatty acid desaturase. (417 aa)    
Predicted Functional Partners:
Srot_0767
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rer:RER_21630 rubredoxin; Belongs to the rubredoxin family.
 
  
 0.961
Srot_0472
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mab:MAB_0983c zinc-containing alcohol dehydrogenase.
     
 0.900
Srot_1892
PFAM: Aldehyde Dehydrogenase; KEGG: mva:Mvan_0105 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
Srot_1937
PFAM: Aldehyde Dehydrogenase; KEGG: rop:ROP_63370 piperideine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
Srot_0765
PFAM: regulatory protein TetR; KEGG: mjl:Mjls_1371 TetR family transcriptional regulator.
 
    0.862
Srot_0766
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: mmi:MMAR_1293 rubredoxin RubB.
  
  
 0.850
Srot_2786
PFAM: Uncharacterised conserved protein UCP07580; KEGG: nfa:nfa30100 hypothetical protein.
  
     0.599
Srot_2203
PFAM: fatty acid desaturase; KEGG: rop:ROP_63970 acyl-CoA desaturase DesA3.
  
     0.530
Srot_2205
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase.
 
  
 0.526
Srot_2204
PFAM: fatty acid desaturase; KEGG: nfa:nfa46040 putative fatty acid desaturase.
  
     0.520
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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