STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0809Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: mkm:Mkms_4915 hypothetical protein. (80 aa)    
Predicted Functional Partners:
Srot_0810
Transcriptional regulator, XRE family; KEGG: bfa:Bfae_04250 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
    0.552
Srot_0811
PFAM: integrase family protein; KEGG: mav:MAV_2266 phage-related integrase; Belongs to the 'phage' integrase family.
     
 0.547
Srot_0806
KEGG: pol:Bpro_1315 phage/plasmid primase P4-like; TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4.
       0.432
Srot_0807
KEGG: mkm:Mkms_3069 hypothetical protein.
       0.425
Srot_0808
Hypothetical protein; KEGG: sit:TM1040_0347 TonB-dependent receptor, plug.
       0.425
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.