STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0830PFAM: putative esterase; KEGG: rer:RER_14670 mycolyltransferase. (320 aa)    
Predicted Functional Partners:
Srot_2770
PFAM: cutinase; KEGG: rop:ROP_39400 hypothetical protein.
  
     0.742
Srot_2767
PFAM: Beta-ketoacyl synthase; phosphopantetheine- binding; Acyl transferase; Thioesterase; KEGG: rha:RHA1_ro04065 polyketide synthase.
 
  
 0.577
lpqB
PFAM: Lipoprotein LpqB, beta-propeller domain-like; Lipoprotein LpqB, GerMN domain; KEGG: rop:ROP_63870 hypothetical protein.
  
     0.547
Srot_0119
KEGG: rha:RHA1_ro05190 hypothetical protein.
  
     0.530
Srot_1500
KEGG: rop:ROP_56460 hypothetical membrane protein.
 
     0.498
Srot_1455
PFAM: extracellular solute-binding protein family 5; KEGG: rop:ROP_68770 hypothetical protein.
  
     0.490
Srot_0127
KEGG: nfa:nfa12230 putative dehydrogenase; TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
  
 
 0.479
Srot_0472
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mab:MAB_0983c zinc-containing alcohol dehydrogenase.
  
 
 0.479
Srot_2472
KEGG: rer:RER_54700 aryl-alcohol dehydrogenase AdhC; TIGRFAM: mycothiol-dependent formaldehyde dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
  
 
 0.479
Srot_0135
KEGG: rha:RHA1_ro02193 hypothetical protein.
 
  
 0.462
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.