STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Srot_0883PFAM: integrase family protein; KEGG: rop:ROP_39830 putative integrase; Belongs to the 'phage' integrase family. (370 aa)    
Predicted Functional Partners:
Srot_0884
Transcriptional regulator, XRE family; KEGG: tfu:Tfu_1801 helix-hairpin-helix DNA-binding motif-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
    0.774
Srot_2810
PFAM: integrase family protein; KEGG: mab:MAB_1816c phage integrase; Belongs to the 'phage' integrase family.
 
 
 
 0.654
Srot_1192
PFAM: integrase family protein; KEGG: mab:MAB_1816c phage integrase; Belongs to the 'phage' integrase family.
  
     0.627
Srot_0885
KEGG: xfm:Xfasm12_1678 hypothetical protein.
       0.538
Srot_0886
Hypothetical protein.
       0.538
Srot_0887
Hypothetical protein; KEGG: gfo:GFO_3268 ATP synthase subunit B.
       0.538
Srot_0091
PFAM: integrase family protein; KEGG: mpa:MAP2752 hypothetical protein.
  
     0.444
Srot_0734
PFAM: integrase family protein; KEGG: mpa:MAP2752 hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.418
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.409
Srot_2936
PFAM: integrase family protein; KEGG: mav:MAV_0698 site-specific recombinase, phage integrase family protein; Belongs to the 'phage' integrase family.
 
 
 
0.408
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.